The ever increasing need for the ability to easily customize, reproduce and migrate applications and workflows are steadily increasing amongst the High Performance Computing (HPC)community,as non-traditional HPC software environments and applications are starting to require HPC resources to tackle “real world” scientific problems. In addition,traditional HPC software are becoming more complex and are often deployed on multiple different architectures.In this talk, we discuss the issues associated with the deployment of containerized environments on secure HPC systems and how we successfully deployed traditional and non-traditional HPC applications on a secure large scale HPC production system with HPC specific containers.